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tag 0.5 documentation
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A
accession (tag.sequence.Sequence attribute)
add_attribute() (tag.feature.Feature method)
add_child() (tag.feature.Feature method)
add_sibling() (tag.feature.Feature method)
AnnotationOutOfBoundsError
AnnotationSortingError
attribute_crawl() (tag.feature.Feature method)
C
cdslen (tag.feature.Feature attribute)
collapse_locus() (in module tag.bae)
collapse_stream() (in module tag.bae)
Comment (class in tag.comment)
consume() (tag.index.Index method)
consume_feature() (tag.index.Index method)
consume_file() (tag.index.Index method)
consume_seqreg() (tag.index.Index method)
contains() (tag.feature.Feature method)
(tag.range.Range method)
contains_point() (tag.feature.Feature method)
(tag.range.Range method)
D
Directive (class in tag.directive)
directives() (in module tag.select)
drop_attribute() (tag.feature.Feature method)
DuplicatedRegionError
E
entry_type_filter() (in module tag.select)
eval_locus() (in module tag.bae)
eval_stream() (in module tag.bae)
F
Feature (class in tag.feature)
features() (in module tag.select)
FeatureTypeDisagreementError
format_seq() (tag.sequence.Sequence method)
G
get_attribute() (tag.feature.Feature method)
get_attribute_keys() (tag.feature.Feature method)
GFF3Reader (class in tag.reader)
GFF3Writer (class in tag.writer)
I
Index (class in tag.index)
intersect() (tag.range.Range method)
L
loci() (in module tag.locus)
M
merge() (in module tag.select)
(tag.range.Range method)
N
NamedIndex (class in tag.index)
ncbi_geneid (tag.feature.Feature attribute)
O
overlap() (tag.feature.Feature method)
(tag.range.Range method)
overlap_atleast() (tag.range.Range method)
overlap_extent() (tag.range.Range method)
P
parse_attributes() (tag.feature.Feature method)
parse_fasta() (in module tag.reader)
pocus() (in module tag.locus)
primary_mrna() (in module tag.transcript)
primary_transcript() (in module tag.transcript)
pseudoify() (tag.feature.Feature method)
Q
query() (tag.index.Index method)
R
Range (class in tag.range)
S
Sequence (class in tag.sequence)
sequences() (in module tag.select)
set_coord() (tag.feature.Feature method)
slug (tag.feature.Feature attribute)
T
tag.bae (module)
tag.comment (module)
tag.directive (module)
tag.feature (module)
tag.index (module)
tag.locus (module)
tag.range (module)
tag.reader (module)
tag.select (module)
tag.sequence (module)
tag.transcript (module)
tag.writer (module)
transform() (tag.feature.Feature method)
(tag.range.Range method)
W
window() (in module tag.select)
within() (tag.range.Range method)
write() (tag.writer.GFF3Writer method)
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