The Python API
==============

The following classes/modules are included **tag**'s Python API, which is under `semantic versioning <http://semver.org>`_.

Range
-----

.. automodule:: tag.range
   :members:

Comment
-------

.. automodule:: tag.comment
   :members:

Directive
---------

.. automodule:: tag.directive
   :members:

Sequence
--------

.. automodule:: tag.sequence
   :members:

Feature
-------

.. automodule:: tag.feature
   :members:

Index
-----

.. automodule:: tag.index
   :members:

Readers
-------

Currently the :code:`readers` module contains only a single class, GFF3Reader,
but may include others in the future.

.. automodule:: tag.reader
   :members:

Writers
-------

Currently the :code:`writers` module contains only a single class, GFF3Writer,
but may include others in the future.

.. automodule:: tag.writer
   :members:

Transcript
----------

.. automodule:: tag.transcript
   :members:

Selectors
---------

.. automodule:: tag.select
   :members:

Locus partitioning
------------------

.. automodule:: tag.locus
   :members:

Bacterial annotation evaluation
-------------------------------

.. automodule:: tag.bae
   :members: